MixSIR

Project Information

Project members
brice.semmens jmoore eric.ward

Sharing
Public


Description
MixSIR is a Bayesian isotope mixing model that incorporates uncertainty in the estimates of mix and source isotope values. The model also provides the opportunity to incorporate prior information for the proportional contribution of each source to the mix. The programs for this project are written in Matlab. I have provided the source files as well as an .exe file package so that those without Matlab can run the program. Collaborations and improvements are welcome! Prior to installing MixSIR you MUST download the (free) Matlab component runtime library and run it once on your machine. Note also that installing new versions of MixSIR will require a new download and installation of the component runtime library.


Files

Project Files / priors_from_gut_contents
  • Download folder
Name Status Rev Size Updated Downloads Brief Description Actions
Parent directory - - - - - - -
constrained_fits
Stable
- 3 items 12/13/07 102102 d
These scripts provide Matlab code to bootstrap gut content data and fit beta distribs for use as priors in MixSIR
dirichlet_constrained.m
In development
1 5.24 KB 12/4/07 1818 f
Constraining Dirichlet distrib to params greater than 1 (ensures good model function). Still making this work.
dirichlet_fit.m
Stable
1 1.33 KB 3/22/08 2727 f
need this to fit the Dirichlet boot strap routines above.
dirichlet_logProb.m
Caution
1 787 B 12/4/07 3333 f
(none)
gut_resamp250tomax_dirichlet.m
Stable
1 7.97 KB 12/4/07 6666 f
This is an example of how to fit Dirchlet distribution to gut content data. Dirchlet is a multinomial beta distribution, and is easily back transformed (generalized) to beta distributions for use as priors.

Keywords



Downloads

422 project downloads
2474 individual file downloads

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